FINDTAR3: Yaou Lab MicroRNA Target Prediction and Analysis

FindTar3 Online Prediction

FindTar3 predicts miRNA targets based on the common criteria, including seed-pairing, free energy of miRNA:target duplex, and proper dynamic programming score. However, the importance of partial complementarity between miRNAs and their targets is the special concern in FindTar3, which is necessary to avoid microRNA target induced instability of microRNAs. The partial complementarity of miRNA:target duplex is presented as central loop score in FindTar3.

FindTar3 provides pre-calculated genome-wide miRNA target database in FindTarBase webpage for the comprehensive view of human, mouse and rat, or customized your miRNA and/or mRNA sequences for online target prediction. The miRNA sequence of database is retrieved from miRBase release version 16 and the Refseq gene sequence is retrieved from UCSC Genome Bioinformatics. (Last update in Nov 18, 2010)

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